Showing posts with label biochemistry. Show all posts
Showing posts with label biochemistry. Show all posts
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Download this file, is about action of epinephrin on liver animation. Epinephrine (also known as adrenaline) is a hormone and a neurotransmitter. It increases heart rate, constricts blood vessels, dilates air passages and participates in the fight-or-flight response of the sympathetic nervous system.
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This video is about sodium and potasium channel animation. You can download it to learn more about it.
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This file is about Weak and strong acid reaction animation.

When an acid dissolves in water, a proton (hydrogen ion) is transferred to a water molecule to produce a hydroxonium ion and a negative ion depending on what acid you are starting from.

In the general case . . .

These reactions are all reversible, but in some cases, the acid is so good at giving away hydrogen ions that we can think of the reaction as being one-way. The acid is virtually 100% ionised.

For example, when hydrogen chloride dissolves in water to make hydrochloric acid, so little of the reverse reaction happens that we can write:

At any one time, virtually 100% of the hydrogen chloride will have reacted to produce hydroxonium ions and chloride ions. Hydrogen chloride is described as a strong acid.

A strong acid is one which is virtually 100% ionised in solution.
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You wanna know about Hydrogen bonding in water? You learn about it after you download Hydrogen Bonding animation using swf format or flash media.
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This file explai about Activasion Energy animation using swf format or flash media. Activasion energy is Chemical reactions ordinarily occur as a result of collisions between reacting particles.
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 Download this file to get Carbon Cycle animation
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The assembly of a eucaryotic ribosome requires the synthesis of four ribosomal ribonucleic acid (RNA) molecules and more than 75 ribosomal proteins. It utilizes all three RNA polymerases; it requires the cooperation of the nucleus and the cytoplasm, the processing of RNA, and the specific interaction of RNA and protein molecules. It is carried out efficiently and is exquisitely sensitive to the needs of the cell. Our current understanding of this process in the genetically tractable yeast Saccharomyces cerevisiae is reviewed.
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This file is about protein folding animation process. Golgi apparatusThe Golgi apparatus is a membrane-bound structure with a single membrane. It is actually a stack of membrane-bound vesicles that are important in packaging macromolecules for transport elsewhere in the cell.

The stack of larger vesicles is surrounded by numerous smaller vesicles containing those packaged macromolecules. The enzymatic or hormonal contents of lysosomes, peroxisomes and secretory vesicles are packaged in membrane-bound vesicles at the periphery of the Golgi apparatus.
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This animation is about golgi apparatus animation using flash media and swf format. Golgi apparatusThe Golgi apparatus is a membrane-bound structure with a single membrane. It is actually a stack of membrane-bound vesicles that are important in packaging macromolecules for transport elsewhere in the cell.

The stack of larger vesicles is surrounded by numerous smaller vesicles containing those packaged macromolecules. The enzymatic or hormonal contents of lysosomes, peroxisomes and secretory vesicles are packaged in membrane-bound vesicles at the periphery of the Golgi apparatus.
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This swf file is about glucose reaction when take into water. This animation using flash media. Both the glucose and water have similar degrees of change in the translational diffusion constants, reflecting the effect of hydrogen bonding on dynamics. Interaction with glucose thus disrupts the organization of the water molecules, as the retarding effect is observed for glucose to water ratio as low as 1:55.

These results hint at the role that sugar may play in cryopreservation: in dry environments the binding of waters by sugar may prevent local dessication, while in cold environments the sugar disruption of the water network may prevent local destruction by favoring glass rather than ice formation.
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 This animation is about Gluconeogenecys diagram. Gluconeogenesis (abbreviated GNG) is a metabolic pathway that results in the generation of glucose from non-carbohydrate carbon substrates such as lactate, glycerol, and glucogenic amino acids.

It is one of the two main mechanisms humans and many other animals use to keep blood glucose levels from dropping too low (hypoglycemia). The other means of maintaining blood glucose levels is through the degradation of glycogen (glycogenolysis).
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This is animation Glicolysis process animation. Glycolysis is a 10-step pathway which converts glucose to 2 pyruvate molecules. The overall Glycolysis step can be written as a net equation:
Glucose + 2xADP + 2xNAD+ -> 2xPyruvate + 2xATP + 2xNADH

Glycolysis consists from two main phases. First phase, energy investment. During this step 2xATP are converted to 2xADP molecules. Second phase, energy generation. During this step 4xADP are converted to 2xATP molecules and 2xNAD+ are converted to 2xNADH molecules.
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This file is about fatty acid animation using flash media. Fatty acid is merely carboxylic acids with long hydrocarbon chains. The hydrocarbon chain length may vary from 10-30 carbons (most usual is 12-18). The non-polar hydrocarbon alkane chain is an important counter balance to the polar acid functional group. In acids with only a few carbons, the acid functional group dominates and gives the whole molecule a polar character. However, in fatty acids, the non-polar hydrocarbon chain gives the molecule a non- polar character.
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This file is about Channel animation. You can download it to know more about channal, and process that happen on that using flash media or swf format.
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This file is about Glycolysis animation, you can download it and learn more about glycolysis process using flash media or swf format.

Glycolysis is the metabolic pathway that converts glucose C6H12O6, into pyruvate, CH3COCOO− + H+. The free energy released in this process is used to form the high-energy compounds ATP (adenosine triphosphate) and NADH (reduced nicotinamide adenine dinucleotide).
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Its about Enzyme, especially kinetics enzyme animation. You can learn more when you,ve download this file. Enzyme kinetics is the study of the chemical reactions that are catalysed by enzymes. In enzyme kinetics, the reaction rate is measured and the effects of varying the conditions of the reaction investigated. Studying an enzyme's kinetics in this way can reveal the catalytic mechanism of this enzyme, its role in metabolism, how its activity is controlled, and how a drug or an agonist might inhibit the enzyme.

Enzymes are usually protein molecules that manipulate other molecules — the enzymes' substrates. These target molecules bind to an enzyme's active site and are transformed into products through a series of steps known as the enzymatic mechanism. These mechanisms can be divided into single-substrate and multiple-substrate mechanisms. Kinetic studies on enzymes that only bind one substrate, such as triosephosphate isomerase, aim to measure the affinity with which the enzyme binds this substrate and the turnover rate.
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This file is about signal Transduction animation using flash media or swf format. Signal transduction occurs when an extracellular signalling molecule activates a cell surface receptor. In turn, this receptor alters intracellular molecules creating a response. There are two stages in this process:

   1. A signalling molecule activates a specific receptor on the cell membrane.
   2. A second messenger transmits the signal into the cell, elicting a physiological response.
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This is animation of aerobic and anaerobic in flash media or swf format. There are two types of respiration (i) aerobic respiration and (ii) anaerobic respiration. While aerobic respiration is a process that requires oxygen, but in anaerobic respiration, oxygen is not required. Therefore aerobic and anaerobic respiration differs in terms of the amount of energy that is produced.

In aerobic respiration, oxygen is always required. During the process of aerobic respiration, the molecules of food are broken down to obtain energy. Oxygen is present at the end point of the electron acceptor. The molecules of fuel that are generally used by the cells of the body during the process of the respiration are composed of glucose, fatty acids and amino acids. In other words, when there is respiration through the aerobic process, Glucose together with Oxygen produces Energy, Carbon Dioxide and Water.

In plain language, anaerobic means where there is no air and thus anaerobic respiration is a term used for the respiration that occurs without the use of oxygen. In this process, the molecules carry oxidation, when oxygen is absent. This results in the production if energy or ATP. This type of respiration is also equivalent to fermentation when energy production path (Glycolytic pathway) is functioning in one cell. There are two processes of this respiration (i) alcoholic fermentation, where the Glucose gets broken down and produces Energy (ATP), Ethanol and Carbon Dioxide as well as (ii) Lactate fermentation where Glucose breaks itself into Energy and Lactic Acid.

Anaerobic respiration produces less energy when compared with the process of aerobic respiration. This can be best illustrated with the fact that during the anaerobic respiration only two molecules of ATP are yielded for one glucose molecule

Anaerobic respiration produces less energy in comparison to aerobic respiration. When the anaerobic respiration (alcoholic fermentation) as at one above functions, only two molecules of ATP are given out for one glucose molecule, while for lactate fermentation as at two above, 2 ATP molecules are given out for each glucose molecule used during the process. Thus, during anaerobic respiration, only one molecule of glucose is broken down to obtain only 2 ATP molecule.
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This file is about enzyme reaction animation in flash media or swf format. Enzymes allow many chemical reactions to occur within the homeostasis constraints of a living system.

Enzymes function as organic catalysts. A catalyst is a chemical involved in, but not changed by, a chemical reaction. Many enzymes function by lowering the activation energy of reactions. By bringing the reactants closer together, chemical bonds may be weakened and reactions will proceed faster than without the catalyst.
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This file is animation about Protein Folding, you can learn more about it when download this file. Protein folding is the process by which a protein structure assumes its functional shape or conformation. It is the physical process by which a polypeptide folds into its characteristic and functional three-dimensional structure from random coil.

Each protein exists as an unfolded polypeptide or random coil when translated from a sequence of mRNA to a linear chain of amino acids. This polypeptide lacks any developed three-dimensional structure (the left hand side of the neighboring figure). Amino acids interact with each other to produce a well-defined three-dimensional structure, the folded protein (the right hand side of the figure), known as the native state. The resulting three-dimensional structure is determined by the amino acid sequence (Anfinsen's dogma).